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Background to the Blue Crabs Data

Data analysed in: Kroonenberg, P. M. (2008). Applied multiway data analysis. Hoboken NJ: Wiley.

Blue crabs (Callinectes sapidus) are of great commercial value in North Carolina and the appearance of diseased crabs in 1986 in a specific region of the Pamlico River caused great concern. Gemperline et al (1992) cited the hypothesis that ''environmental stress weakens the organism so that its normal immunological response is unable to ward off opportunistic infection by chitinoclastic bacteria''. These bacteria were considered to be the cause of penetration of the carapace with lesions of 5-25 mm. To investigate whether trace element levels might be associated with the occurrence of the disease, Gemperline and his colleagues collected gill, hepatopancreas, and muscle tissue samples taken from blue crabs in each of three categories: Albemarle Sound, non-diseased Pamlico and diseased Pamlico. Twenty-five trace elements were used for the main analysis, so that a 48 (tissue samples) by 3 (tissue types) by 25 (trace elements) three-mode array was available for analysis.

Very Blue Crab

Copyright image: Mike Oesterling - Courtesy of the Virginia Institute of Marine Science. Please respect this copyright by not using this image without permission.

References


Data description

Samples from three individual crabs were pooled, giving a total of 16 pooled tissue samples in each category and a grand total of 48 pooled tissue samples. To facilitate the discussion, we will refer to a ``blue crab'' rather than as ``the combined tissue of three individual crabs collected from the same location''.

Thus there is a (between-subject) design on the first mode, because each crab belongs to one category:

Rows (1st mode): Blue crabs

48 Blue Crabs originating from the Albermarle Sound (Healthy), Pamlico River (Healthy), Pamlico River (Diseased)

Columns (2nd mode): Tissue types

1.Gill
2.Hepatopancreas
3.Muscle

Slices (3rd mode): Trace elements

No.Trace Element Description
1.AgSilver
2.AlAluminium
3.AsArsenicum
4.CaCalcium
5.CdCadmium
6.CoCobalt
7.CrChrome
8.CuCopper
9.FeIron
10. KPotassium
11.LiLithium
12.MgMagnesium
13.MnManganese
14.MoMolybdene
15.NaNatrium/salt
16.NiNickle
17. PPhosphor
18.PbLead
19.SeSelenium
20.SiSilicium/Silica
21.SnTin
22.TiTitamium
23. UUranium
24. VVanadium
25.ZnZinc

Data arrangement

A three-way data array X = (x(i,j,k)) has the following form

                        |-----|i=1
                   |-----|    |i=2
              |-----|    |    |..
              |     |    |    |..
              |     |    |____|i=I=48    k=K=25
              |     |____|            k=2
              |_____|              k=1
            j=1,.,J=3
      

The actual data file has the following form:

          j=1,.,J=3
            |-----|i=1
            |     |i=2
            |     |..     k= 1
            |     |..
            |_____|i=I=48
            |-----|i=1
            |     |i=2
            |     |..     k= 2
            |     |..
            |_____|i=I=48
            |-----|i=1
            |     |i=2
            |     |..     k=K=25
            |     |..
            |_____|i=I=48
      

Thus the first mode (i) is nested in the third mode (k) so that there are 1200 rows, i.e. I=48 (Crabs) times K=25 (Trace elements) rows and there are J=3 (Tissue types) columns. The first 16 crabs are the Albermarle ones, the next 16 the healthy Pamlico ones and the final 16 crabs are the diseased Pamlico crabs.


Data handling

Preprocessing

In the Kroonenberg et al. principal component analyses, the data were centred per column (tissue type) x(j,k) so that the columns were in deviation of their mean. After this the frontal slices (trace elements) Xk were normalised to sum of squares equal to 1, so that the total sum of squares of the preprocessed data was 25. For a three-mode cluster analyses no preprocessing is necessary because means and covariances are explicitly modelled. For details see Kroonenberg (2008). Applied multiway data analysis. Hoboken NJ: Wiley (Chapters 6 and 16).

Permissions

These data have kindly been made available for bonafide researchers by Prof. P. J. Gemperline. Please be sure to quote the papers mentioned above and this website when using these data in a publication.

[Download the zipped 1989 Blue Crabs Data]


| Centre for Child and Family Studies | Institute of Leiden Institute of Education and Child Studies | The Three-Mode Company | Three-Mode Data Sets | TOP |
P.M. Kroonenberg
Institute of Leiden Institute of Education and Child Studies, Leiden University
Wassenaarseweg 52, 2333 AK Leiden, The Netherlands
Tel. *-31-71-5273446/5273434 (secr.); fax *-31-71-5273945
E-mail: kroonenb at fsw.leidenuniv.nl

Created: 10-7-2009
Last Updated: 10-7-2009